Journal Publications

Ye, Zisheng, Ma, Zhan, Safdarian, Ebrahim, Yazdani, Shirindokht and Pan, Wenxiao, H-HIGNN Toolkit: A Software for Efficient and Scalable Simulation of Large-Scale Particulate Suspensions Using GNNs and H-Matrices, Journal of Open Source Software 11, 8777, 2026
Ye, Zisheng and Pan, Wenxiao, Towards quantum accelerated large-scale topology optimization, Computer Methods in Applied Mechanics and Engineering 453, 118819, 2026

Ye, Zisheng and Pan, Wenxiao, Discrete variable topology optimization using multi-cut formulation and adaptive trust regions, Structural and Multidisciplinary Optimization 68, 25, 2025 [paper]
Ma, Zhan, Ye, Zisheng, Safdarian, Ebrahim and Pan, Wenxiao, H-HIGNN: A Scalable Graph Neural Network Framework with Hierarchical Matrix Acceleration for Simulation of Large-Scale Particulate Suspensions, arXiv preprint arXiv:2505.08174, 2025

Ye, Zisheng, Qian, Xiaoping and Pan, Wenxiao, Quantum Topology Optimization via Quantum Annealing, IEEE Transactions on Quantum Engineering 4, 1-15, 2023 [paper]

Ye, Zisheng, Hu, Xiaozhe and Pan, Wenxiao, A Multigrid Preconditioner for Spatially Adaptive High-order Meshless Method on Fluid-solid Interaction Problems, Computer Methods in Applied Mechanics and Engineering 400, 115506, 2022 [paper]
Ma, Zhan, Ye, Zisheng and Pan, Wenxiao, Fast Simulation of Particulate Suspensions Enabled by Graph Neural Network, Computer Methods in Applied Mechanics and Engineering 400, 115496, 2022 [paper]

Huang, Xiaonan, Kumar, Kitty, Jawed, Mohammad Khalid, Mohammadi Nasab, Amir, Ye, Zisheng, Shan, Wanliang and Majidi, Carmel, Highly Dynamic Shape Memory Alloy Actuator for Fast Moving Soft Robots, Advanced Materials Technologies 4, 1800540, 2019 [paper]
Huang, Xiaonan, Kumar, Kitty, Jawed, Mohammad Khalid, Ye, Zisheng and Majidi, Carmel, Soft Electrically Actuated Quadruped (SEAQ)—Integrating a Flex Circuit Board and Elastomeric Limbs for Versatile Mobility, IEEE Robotics and Automation Letters 4, 2415-2422, 2019 [paper]

Huang, Xiaonan, Kumar, Kitty, Jawed, Mohammad K, Mohammadi Nasab, Amir, Ye, Zisheng, Shan, Wanliang and Majidi, Carmel, Chasing Biomimetic Locomotion Speeds: Creating Untethered Soft Robots with Shape Memory Alloy Actuators, Science Robotics 3, eaau7557, 2018 [paper]

Liu, Cheng, Ye, Zisheng and Hu, Haiyan, An Efficient Parallel Algorithm for Flexible Multibody Systems Based on Domain Decomposition Method, SCIENTIA SINICA Physica, Mechanica & Astronomica 47, 104603, 2017 [paper]